Welcome to scopyon’s documentation!¶
scopyon
is a Monte Carlo simulation toolkit for bioimagins systems.
The source code is available at https://github.com/ecell/scopyon.
Prerequisites¶
For scopyon
, Python 3 and its libraries, numpy
, scipy
, matplotlib
, pyyaml
and pint
, are required (see also requirements.txt). Installation of scikit-image
, pillow
and plotly
is also recommended.
Installation¶
pip install scopyon
or
git clone https://github.com/ecell/scopyon.git
cd scopyon
python setup.py test install
Quick start¶
python examples/twocolor.py
Citation¶
If this package contributes to your work, please cite the following.