Welcome to scopyon’s documentation!

scopyon is a Monte Carlo simulation toolkit for bioimagins systems.

The source code is available at https://github.com/ecell/scopyon.

Prerequisites

For scopyon, Python 3 and its libraries, numpy, scipy, matplotlib, pyyaml and pint, are required (see also requirements.txt). Installation of scikit-image, pillow and plotly is also recommended.

Installation

https://badge.fury.io/py/scopyon.svg
pip install scopyon

or

git clone https://github.com/ecell/scopyon.git
cd scopyon
python setup.py test install

Quick start

python examples/twocolor.py
TIRF Image

Examples

See Examples for a list of examples.

License

scopyon is licensed under the terms of BSD-3-Clause (see LICENSE).

Citation

If this package contributes to your work, please cite the following.

https://doi.org/10.1371/journal.pone.0130089